Bioinformatics Education Dissemination: Reaching Out, Connecting and Knitting-together

Tools


The Arabidopsis Information Resource(tair) for microarray expression information

This site allows searching for microarray gene expression profiles.

http://www.arabidopsis.org/servlets/Search?action=new_search&type=expression


AtGenExpress Visualization Tool (AVT) for visualizing Arabidopsis expression patterns

Microarray data and sample descriptions from the AtGenExpress project.

http://jsp.weigelworld.org/expviz/expviz.jsp


Swami, The Next Generation Biology Workbench

The Next Generation Biology Workbench is a free resource for research and education in Bioinformatics, Genomics, Proteomics, and Phylogenetics. The NGBW is a re-engineering of the Biology Workbench which was designed by Shankar Subramaniam and his group to provide an integrated environment where tools, user data, and public data resources can be easily accessed. It has been re-engineered here using best practices from industry and academia to provide high performance analytical tools to the research and education communities. It is designed to be an organic tool that evolves with the needs of the community.

http://www.ngbw.org


Biology WorkBench
Orientation to the Biology Workbench (pdf)

The Biology Workbench is a web-based tool for biologists. The Workbench allows biologists to search many popular protein and nucleic acid sequence databases. Database searching is integrated with access to a wide variety of analysis and modeling tools, all within a point and click interface that eliminates file format compatibility problems.

http://workbench.sdsc.edu


National Center for Biotechnology Information (NCBI)

NCBI investigators develop new methods for integrative, computer-based data analysis to mine massive and complex data sets. Once developed, these software tools may then be used by the research community to answer specific scientific questions.

http://www.ncbi.nlm.nih.gov/


GIS software - ArcExplorer 9 Java Edition for Education

ArcExplorer is a lightweight GIS data viewer written in Java that is used to perform basic GIS functions (e.g., view, navigate, and query). It is a downloadable application that operates in a stand-alone environment and does not need to connect to a server.

http://www.esri.com/software/arcexplorer/download-education.html


Global Biodiversity Information Facility (GBIF)

Access millions of data records shared via the GBIF network and use the OpenModeller program to generate niche models.

http://www.data/gbif.org/welcome.htm


Intergovernmental Panel on Climate Change (IPCC) - Data Distribution center

The DDC has been established to facilitate the timely distribution of a consistent set of up-to-date scenarios of changes in climate and related environmental and socio-economic factors for use in climate impacts assessments. The intention is that these new assessments can feed into the review process of the IPCC.

http://www.ipcc-data.org/maps/

 

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