Bioinformatics Education Dissemination: Reaching Out, Connecting and Knitting-together

Tools


Swami, The Next Generation Biology Workbench

The Next Generation Biology Workbench is a free resource for research and education in Bioinformatics, Genomics, Proteomics, and Phylogenetics. The NGBW is a re-engineering of the Biology Workbench which was designed by Shankar Subramaniam and his group to provide an integrated environment where tools, user data, and public data resources can be easily accessed. It has been re-engineered here using best practices from industry and academia to provide high performance analytical tools to the research and education communities. It is designed to be an organic tool that evolves with the needs of the community.

http://www.ngbw.org


Biology WorkBench
Orientation to the Biology Workbench (pdf)

The Biology Workbench is a web-based tool for biologists. The Workbench allows biologists to search many popular protein and nucleic acid sequence databases. Database searching is integrated with access to a wide variety of analysis and modeling tools, all within a point and click interface that eliminates file format compatibility problems.

http://workbench.sdsc.edu


ExPASy Proteomics and sequence analysis tools

The ExPASy (Expert Protein Analysis System) proteomics server of the Swiss Institute of Bioinformatics (SIB) and is dedicated to the analysis of protein sequences. Linked here are tools for secondary structure analysis.

http://ca.expasy.org/tools/#secondary


National Center for Biotechnology Information (NCBI)

NCBI investigators develop new methods for integrative, computer-based data analysis to mine massive and complex data sets. Once developed, these software tools may then be used by the research community to answer specific scientific questions.

http://www.ncbi.nlm.nih.gov/

 

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