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The WHIPPO-1 Dataset

Comprehensive
Dataset
Descriptions

John Gatesy and his colleagues (1999) compiled 17 data sets to examine the phylogenetic relationships between Artiodactyla (even-toed ungulates) and Cetacea (whales). The datasets include molecular sequences, other molecular characters and morphological data. They include representatives of 13 taxonomic groups. While each taxon is not represented in each dataset, the data sets all include representatives from each of the four major clades of extant artiodactyls. The primary goal of this analysis was to look at the phylogenetic position of the Cetacea with respect to the Artiodactyl groups. This data provides a rich resource for looking closely at the use of multiple sources of data for establishing phylogenetic hypotheses.


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Summary of the datasets        

Representatives from 13 taxa:

8 Artiodactyl taxa

Bovidae (sheep, cattle, bison, springbok and antelopes)
Cervidae (deer)
Girafidae (giraffes)
Tragulidae (chevrotains)
Hippopotamidae (hippos)
Camelidae (camels and llamas)
Tayassuidae (peccaries)
Suidae (pigs)

4 Cetacean taxa

Physeteridae (sperm whales)
Delphinoidea (beluga whale, dolphins and porpoises)
Ziphiidae (beaked whales)
Mysticeti (baleen whales)

1 outgroup taxon

Outgroup (rhinos, horses and guinea pigs)

17 data sets:

Amino acid sequences:

a -hemoglobin  
b -hemoglobin 
pancreatic ribonuclease 
a -crystallin A  
cytochrome c  

All amino acid sequences were downloaded from the National Center for Biotechnology Information (NCBI)

Mitochondrial DNA sequences:

cytochrome b  
12S ribosomal DNA  
16S ribosomal DNA  

DNA sequences:

a -lactalbumin exons 13   
a -lactalbumin introns 12.
b -casein exon 7   
b -casein intron 7   
k -casein exon 4   
g -fibrinogen exons 24  
g -fibrinogen introns 23
IRBP interphotoreceptor retinoid-binding protein   
protamine P1 exons 12   
protamine P1 intron 1 + 5'3'-noncoding regions   
vWF von Willebrand factor  

DNA sequences were fromNCBI, Queralt et al. (1995), and Gatesy (1998).

Skeletal/dental characters for Artiodactyla. Gentry and Hooker (1988)   

Short interspersed elements (SINES). Shimamura et al. (1997)  

 

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