in silico Lab- Monday

"in silico DNA, RNA, Protein Sequence,
and Structure Analysis:
Theory and Practice"


MONDAY, 17 January 2000


Morning Lectures

9:30 AM Historical background of computational biology

"Ten Equations that Changed Biology and that Should Change Biology Education"

Mathematics has played exceptionally important roles throughout the history of biology. More biology students take Calculus than any other single constituency. Too frequently, textbook authors have unappreciated mathematics in biology curricula because they assume that biology students have an inadequate mathematical preparation. This practice: (1) de-skills many biology students, (2) is inconsistent with our requirements, (3) misrepresents contemporary biological research, and, (4) under prepares students to read many articles or to contribute to many areas of biology. However, the recent calculus and biology reform movements have empowered students to actively investigate the behavior of many famous mathematical models in biology. While numerous recent publications are replete with numerous models, there is a need to identify a succinct list of achievements that represent the power of mathematics in biology. Hence, "ten equations that changed biology" and a brief description of their historical importance are presented here with BioQUEST software instantiations in order to: first, draw attention to a variety of mathematical models that have been intrinsic to significant discoveries in biology and, second, to illustrate that the tools are currently available for engaging students in active investigation of biological phenomena and the development of systematic strategies for biological problem solving.

Bibliography

10:45 AM Break

11:15 AM Protein Chemistry: a review of everything we have forgotten as well as a survey of the common folds and common methods for structure determination.

"Protein Architecture"

How is structure determined? Well, of course, it depends on whether you are referring to the primary (1û), secondary (2û) or the tertiary (3û) structure. We will discuss current methods for determining these structures as well as reviewing general protein chemistry.


Bibliography

12:30PM - 2PM Lunch

MONDAY Afternoon Laboratories
2 PM The art of Protein Sequencing: building long term strategies for identifying unknown proteins.

SOFTWARE: SequenceIt! (MacOS but runs in an emulator (Executor) in Windows)

3:30 PM Break

3:45 - 5 PM The beauty of Protein Structure: a tour of our favorite proteins!

SOFTWARE: SwissPDB Viewer (MacOS, Windows, Unix)


Webware:




Databases






Email notification of sequences which are of interest to you!

Swiss-Shop Registration



BioSCI. Search/Read through helpful hints, address database, or post your own questions/answers to other peoples problems.

Need an email address for a colleague? Try: Who Where? or Four 11 White Pages or go directly to the College or University homepage .


Bibliography - Ten Equations


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Bibliography - Protein Architecture


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Last modified: Wed Dec 30 11:26:05 1999